Editor:
Gerhard M. Kresbach, PhD, D-79219 Staufen, Germany
Comments and suggestions for enhancements and new links are very much appreciated --- email: kresbach@kresbach.de
Life-Science News & Information
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News & Alert Services
- Analytik News German on-line edited portal for analytical life science related information
- BioExchange Portal for the biotechnology and pharmaceutical industry news
- Biomolecular Screening Portal
for biomolecular screening - News, products, resources
- Bioportfolio Information portal related to bio/pharma/life science industries
- BioSpace Public website of BioSpace Inc. to deliver life sciences related resources and information
- Bioworld Biotechnology daily news and information
- BIO-ITWorld.com Information Technology for the Life Sciences
- Chemsoc News updates, on-line magazine, job and conference notices, and product infos - Royal Society of Chemistry
- Chemspy chemistry news chemistry search, news and views and chemistry videos website
- EurekAlert Research news - AAAS
- gene-sensor.com - Life Sciences Business Intelligence
Manually curated and systematically edited information for life sciences business [commercial]
- Forschungsportal Search engine to scan german research activities and to locate BMBF funded reports and publications
- Informationsdienst Wissenschaft News platform covering activities of several hundred universities and research institutions in Germany, Austria and Switzerland - german
- Lab-on-a-Chip Portal for microfluidics in life sciences - Products, resources, jobs
- Life-Sciences-Europe.com Web portal for the life sciences in Europe and Israel
- Life-Sciences-Germany.com Web portal for the life sciences in German-speaking Europe
- MedBioWorld Resource portal for medical and biotechnology information
- NTIS - National Technical Information Service
The US federal government's central resource for government-funded scientific, technical, engineering, and business related information
- PubCrawler Free alerting service that scans daily updates to the NCBI Medline (PubMed) and GenBank databases. It helps keeping scientists informed of the current contents of Medline and GenBank, by listing new database entries that match their research interests.
- Research Explorer Information about 19000 german research institutes at german universities and publically funded research centers - german
- theLabRat.com Information center for scientists and researchers - job listings, company profiles, suppliers, and protocols
Back to Life-Science News & Information
Science Search Engines
- Entrez, The Life Science Search Engine Cross-database search page for all NCBI Web and FTP sites - NCBI
- MedNets Search engines for every speciality in medicine searching only medical databases
- Quality Search McKinsey´s search engine for topics
in science, research, and economics
- ScienceResearch.com Deep web search engine returning the most relevant results from over 300 science and technology collections
- SciNet Science and technology search engine
- Scirus Comprehensive science-specific search engine
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Life Sciences Company Information
Back to Life-Science News & Information
General
Resource Locators
- analytik
de Comprehensive compilation of analytics related
recources, tools and informations - german
- antikoerper-online.de
Marketplace for research antibodies - Over 300.000 antibodies and ELISA kits
- Biocompare
Resource locator for life science activities
- BIO -
Biotechnology Industry Organization Information on
biotechnology aspects - links to biotechnology companies
- BIOMarketplace
Database service to locate suppliers and
service providers
- BioSci
Register Guide to biotechnology and life sciences
industry suppliers
- BioScreening.com
- Drug Discovery Portal Resource locator for
compounds, equipment, and services that support drug discovery in the
pharmaceutical and biotechnology industry
- BuyersGuideChem
Buyers guide of european chemical suppliers
- Chemdex.com
Commercial on-line source of biological and chemical reagents,
featuring over 160,000 products from about 150 different suppliers -
registration required
- ChemConnect
Information resources to connect commercial chemical buyers and sellers
- suppliers directory, chemicals wanted exchange, surplus chemicals for
sale, reference library
- Chemcyclopedia Online
Search engine for commercially available chemicals
- Chemindustry
Specialized search service for chemical and related industries
- Chemscope
Suppliers search and order
- ChemSuppliers.org
Directory of companies providing products and services for drug
discovery industry
- FOB
Chemicals Comprehensive database of 330,000 chemical
products from over 8000 suppliers worldwide
- Industry
Net Product / service / company database
- Lab
Crawler ISC Buyers' Guide - product and
manufacturers search engine
- Laborprodukte.de
Compilation of german laboratory equipment products and providers
- Molport
Database of more than 6 million commercial molecules from more than 200 chemicals suppliers - name based as well as structural searches are possible
- Nature
Biotechnology: Buyers' Guide Links to biotechnology
companies and products
- SciQuest
Suppliers Scientific buyer´s guide
- WLW - Search, Find, Buy in Europe
Locator of suppliers and resources in Europe
- ZINC
Free database of commercially-available compounds for virtual screening
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Back to Index
Literature
Search Engines
- Article@Inist
Free access to 10 000 international periodical titles in sciences,
technology, medicine, human and social sciences, 5 mio. article and
monography references, 400 000 tables of content
- BioMail
Automated search engine for biological and medical literature. BioMail
will search PubMed for papers in biomedical journals using user defined
search terms. Results are emailed weekly, biweekly or monthly.
- Biosis
Biological abstracts and zoological records
- DIMDI
Deutsches Institut für Medizinische Dokumentation und
Information - grips-Websearch: Derwent biotech database, Press
releases, free and fee based database searches
- MedBioWorld Links to about 8000 scholarly journals in life sciences
- PubMed
PubMed comprises more than 21 million citations for biomedical literature from MEDLINE, life science journals, and online books. Citations may include links to full-text content from PubMed Central and publisher web sites.
- Science.gov
Science.gov searches over 50 databases and over 2100 selected websites from 12 federal agencies, offering 200 million pages of authoritative U.S. government science information including research and development results.
- STN
Easy Scientific literature databases - requires
access code
- STN
on the web Scientific literature databases -
requires access code
Back to Scientific Literature
On-Line
Journal Aggregators
- Bioline
On-line Library of free, full-text scientific journals from the
developing world
- ChemPort
Access to full-text documents from key scientific publishers and patent
offices
- ChemWeb
Free searching and browsing in key scientific journals. In many cases
abstracts are also free. Alerting service is offered
- Directory
of Open Access Journals - DOAJ Links to more than
350 journals with free, full-text articles
- HighWire
Press Internet imprint of the Stanford University
libraries
- Institution
Archives Registry Links to more than 400 sites that
store open-access papers, dissertations, and unreviewed manuscripts
- MetaXchem
Search of chemistry and biochemistry related articles in journals of
over 20 publishers
- PrePrint
Network The Department of Energy's PrePRINT Network
is a searchable gateway to preprint servers that deal with scientific
and technical disciplines of concern to DOE. Such disciplines include
the great bulk of physics, materials, and chemistry, as well as
portions of biology, environmental sciences and nuclear medicine.
- PubMed
Central (PMC) U.S. National Institutes of Health
(NIH) free digital archive of biomedical and life sciences journal
literature
- Springer
Link 400 titles, several web-only journals. Full
searching, links across titles and to external archives
- Wiley
Journals Online Online access to some 300 Wiley
journals
Back to Scientific Literature
Literature
Search & Supply Services
- NEBIS
Network of libraries and information centers in Switzerland
- Subito
Literature searches - supported by the german federal government
Back to Scientific Literature
Publishers
& E-Archives
- Archive
Archival storage of internet publications
- Beilstein
- BioMed
Central Independent publishing house committed to
provide free access to peer-reviewse biomedical research. Publisher of
BMC online journals like BMC Bioinformatics
- Börsenverein
des deutschen Buchhandels Database of books written
in german
- Community
of Science WWW as a platform to publish specialized
information for researchers electronically in an easy-to-access format
- US government sponsored
- Die
Deutsche Bibliothek On-line catalog of the resources
of the Deutsche Bibliothek Frankfurt, Deutsche Bücherei
Leipzig, and Deutsches Musikarchiv Berlin: dissertations,
habilitations, publications in german, german publications issued out
of germany
- Digitale
Bibliothek Braunschweig Files of rare botanical
and pharmaceutical books
- Elsevier
Publishers ScienceDirect 650 titles, 5 web-only
journals. Full searching, links across titles and to external archives
- International
Publishers
- JSTOR
Journal Storage - The Scholarly Journal Archive. Archive of older
journals in the field of humanities and general sciences -
institutional membership required
- Los
Alamos National Laboratory e-Print Achive e-archive
for electronic publications; focus on physics and mathematics
- NDLTD
Networked Digital Library of Theses and Dissertation
e-Archive for digital dissertations
- Octavo
Corp. Octavo Corp. publishes rare books,
manuscripts, and antiquarian printed material in technologically
advanced digital formats. The material is presented from cover to cover
in digital files that are easily accessible, printable, and searchable,
enabling readers to read the text or zoom in to see the finest details
of the object such as the sparkle of letter-pressed type and the
textured surface of the paper.
- Persistent
Uniform Resource Locator e-Archive for electronic
publications
- PLoS
Public Library of Science - non-profit organization of scientists and
physicians committed to make scientific and medical literature a freely
available public resource.
Back to Scientific Literature
Libraries
Back to Scientific Literature
Publications
- Varia
Back to Scientific Literature
Back to Index
General
- Academic Info Directory of Internet resources tailored to a
college or advanced high school audience
- Access Excellence Science teachers information and
discussion forum
- Ask the Experts Archive Scientific American expert
service for scientific questions
- CyberMetrics General
scientific, technical, and medical portals, resources, and directories
for use in scientometrics, informetrics, and bibliometrics
- Frontier
is Bioscience On-line journal, virtual library, and
knowledge center including biochemistry databases
- Infomine
Scholarly internet resource Collections - University of California
- IBM Web Lectures IBM Life
Sciences Web Lecture Series - Collection of lectures about IBM's and
partner company's IT solutions in biotechnology,
pharmaceutical/academic research, genomics, proteomics, and healthcare
- MIT
OpenCourseWare Free sampling of course materials
from MIT's Faculty
- Next
Wave Science's electronic network for scientists
- NIST
WebBook Gateway to the data collections of the
National Institute of Standards and Technology
- SciClips - Open Innovation Platform for Scientific Breakthroughs, Collaborations and Philanthropism Platform for exchange of ideas, initiation of collaborations, access to ressources and databases
- Scientist
Solutions Moderated internet discussion site to
provide scientists a resource for the exchange of ideas and information
- SciSeek
On-line resource for science and nature
- The Why
Files Science behind the news - addresses
scientific, technical, as well as mathematical backgrounds of everyday
issues
- The
World of Science Features science news briefs,
in-depth articles, and biographies of famous scientists as well as a
collection of links to magazines and journals in chemistry, biology,
physics, and other sciences
- Turning the Pages
Showcase of rare science related printed works - British Library London
- Virtual
Library: Science Directory of science related web
sites compiled by subject areas
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Scientific
& Linguistic Dictionaries
Back to Scientific Resources
Protocols
- bioProtocol.com
Compendium of more than 1,500 browsable laboratory protocols - hosted
by Bio Online
- Buffers
for pH control Calculates thermodynamically correct
buffer composition
- Molecular
Biology Protocols Comprehensive collection of
protocols for DNA purification, library preparation, sequencing, and
general protocols in the field of microbiology - US Dept
Commerce/NOAA/NMFS/NWFSC
-
Molecular Biology Techniques Forum Professional
forum for reader-submitted techniques, tips and questions concerning
molecular biology covering among others DNA/PCR, RNA, protein, and
general methods as well as software aspects
- Molecular Biology Today - Molecular Biology
Protocols A list of sites with protocols, by Hugh
Griffin, published in Analytical Biochemistry 239, 120-122 (1996)
- Molecular Biology Techniques Manual
Ed Rybicki, Department of Microbiology, University of Cape Town, SA
- The Nest Group Molecular Protocols and
Application Guides
- Protocols for Recombinant DNA Isolation,
Cloning, and Sequencing University of Oklahoma's
Advanced Center for Genome Technology
- Protocol
Online Links to hundreds of protocols and methods in
molecular and cell biology
- RestrictionMapper
Program to determine cutting positions out of a list of
several hundred commercially available restriction enzymes
- IPMB
DNA Microarray Core Laboratory Protocols Protocols
adapted from the "DNA microarray protocols" of the Arabidopsis
Functional Genomics Consortium
- Bioprotocol
Microarray related laboratory protocols - subset of a compendium of
more than 1,500 browsable laboratory protocols - hosted by BioOnline
- The Brown Lab Protocols
Protocols covering the full range from slide preparation to data
processing
- NHGRI Protocols
Protocols covering microarray fabrication, RNA extraction, sample
labeling, and hybridization
- NIA Protocols Protocols
cover especially nylon membrane microarrays - National Institute of
Aging
- Resources Genomics and Microarray Laboratory
University of Cincinnati Microarray laboratory collection
of microarray related protocols covering RNA isolation, labeling,
hybridization, and analysis of microarrays
- TIGR Microarray Publications
Protocols covering template preparation, PCR amplification and
purification, printing in DMSO, amino-allyl labeling, and hybridization
Back to Scientific Resources
Scientific
Images & Illustrations
- Anatomia 1522 - 1867 - Anatomical Plates
from the Thomas Fisher Rare book Library
Approximately 4500 full page plates and other significant illustrations
of human anatomy selected from the Jason A. Hannah and Academy of
Medicine collections in the history of medicine
- BIODIC
- The Ultrastructure Website More than 1000
microscopic images of cells, bacteria, fungi, pollen, mites etc.
- Bowling Green State University - Center for
Algae Microscopy and Image Digitazion Archive of
scanning electron micrographs and light microscopy images of diatoms
- Bristol
Biomed Image Archive Collection of medical, dental
and veterinary images for use in teaching
- CBS Databases Searchable
databases of filamentous fungy, yeasts, actinomycetes, aphyllophorales,
and fusarium - Centraalbureau voor Schimmelcultures, The Netherlands
- Cellnucleus
Portal for the field of nuclear organization and higher-order chromatin
structure. Includes teaching materials for lectures, study materials
for students, and advanced research material for professionals
- cells.de
Videoclips of cells and microorganisms - Institut für den
Wissenschaftlichen Film, Göttingen
- Cells
Alive Drawings, micrographs, and movies of cells and
microorganisms
- DIATOMS Optical
Microscopy images of diatoms
- Kunkel´s
Microscopy Web Site Photomicrographs of microbes,
insects, and crystals
- Molecular
Biology of the Cell Title pages and peer reviewed
videos of cell events
- BrainInfo
Maps of brains of primates
- Nanoworld
Electron microscopy images of the Centre for Microscopy and
Microanalysis at the University of Queensland / Australia
- Parasitology Resources
Parasites related informations and images and links to additional image
resources
- SimTK
Repository for physics-based simulation models in biomedicine
- Virtual
Cell Animation Collection Illustration of cellular
functions using still images and movies
- Visible Human Project NIH
- The
Amazing Picture Machine Locates educational images
in the internet - North Central Regional Technology in Education
Consortium tools for teaching and learning
- American
Institute of Physics - Emilio Segre Visual Archives
Collection of some 25,000 historical photographs, slides, lithographs,
engravings, and other visual materials
- Anatomia 1522 - 1867
Collection featuring approximately 4500 full page plates and other
significant illustrations of human anatomy selected from the Jason A.
Hannah and Academy of Medicine collections in the history of medicine
at the Thomas Fisher Rare Book Library, University of Toronto
- The
Bioimage Homepage European initiative for a New
Database of Multidimensional Biological Images - very comprehensive
link list to biotechnology images, multimedia and interactive WWW sites
- California
Institute of Technology - Institute Archives
PhotoNet: a searchable database containing scanned images of a portion
of the Archives' collection of visual material
- A Comic Book Periodic Table
Collection of some 200 chemistry related comic pages
- Edgar
Fahs Smith Collection of Images Prints, engravings,
and photographs images of scientists, laboratories, and scientific
apparatus is reproduced on this site - copies of any of the 3000 images
of the entire collection can be purchased on-line
- EPACT
- Scientific Instruments of Medieval and Renaissance Europe
Epact is an electronic catalogue of medieval and renaissance scientific
instruments from the Museum of the History of Science, Oxford, the
Istituto e Museo di Storia della Scienza, Florence , the British
Museum, London, and the Museum Boerhaave, Leiden.
- Genetic Illustrations
NHGRI collection
- Images
from the History of Medicine Collection including
portraits, pictures of institutions, caricatures, genre scenes, and
graphic art in a variety of media, illustrating the social and
historical aspects of medicine
- Medicine
and Madison Avenue The Medicine and Madison Avenue
Project presents images and database information for approximately 600
health-related advertisements printed in newspapers and magazines.
These ads illustrate the variety and evolution of marketing images from
the 1910s through the 1950s
- Nearing
Zero Subject Galleries An archive of science
& general cartoon freeware
- Pictures of Famous Physicists
University of Frankfurt gallery of scientists
- Sandia
National Laboratories - Intelligent Micromachine Initiative
Library of micromachined devices
- Virtual Polyhedra
Collection of thousands of virtual reality polyhedra
- Viselements
Visual Interpretation of the Table of Elements
- Yale Image Finder
Searches the actual image content of over 34,000 Open Access articles from PubMed Central
Back to Scientific Resources
Spectroscopy
Information and Databases
- ACD/Web Librarian
Commercial access to NMR spectra
- BioMagResBank
Repository for NMR data of proteins, peptides, and nucleic acids
- FTIRSearch.com
Commercial access to FTIR spectra
- NIST
Chemistry WebBook National Institute of Standards
Reference databases, covers MS, IR and UV/VIS spectra
- NMRShiftDB
Open-source, open-access, open-submission, open-content web database
for chemical structures and their nuclear magnetic resonance data
- SDBS Integrated Spectral Data Base System for Organic Compounds - MS, NMR, IR, Raman, and ESR spectra. Powered by AIST
- SPECARB - Raman Spectra of Carbohydrates
Experimental database that contains Raman spectra of carbohydrates
- Spectroscopy
Now Online resources for spectroscopy - currently no
databases
- SpecInfo
Chemical Concept's spectra database - commercal service with free demo
database with more than 5,000 13C-NMR, 1H-NMR, MS and IR spectra
- TeleSpec Tool for the
simulation of infrared spectra, especially for compounds whose spectra
are not available in any database - University of Erlangen, Germany
Back to Scientific Resources
Biology,
Biotechnology & Molecular Biology
- AgBiotechNet
Information on agricultural biotechnology issues like genetic
engineering, in vitro culture, biosafety, intellectual property rights
and other key issues
- BICS
Biotechnology information and communication - home page of the priority
programme biotechnology of the Swiss National Science Foundation
- Biochemistry in 3D
Collection of interactive tutorials using 3D structures to teach
concepts in Biochemistry. It is designed to accompany Lehninger
Principles of Biochemistry 3rd edition
- Biochemistry of Metabolism
Instructional materials for a studio-format course
- BioChemWeb
Virtual library of biochemistry, moleculer biology and cell biology
- biolinks.de
Selected and commented links to fields of biology equally relevant for
science and society
- BiosciEdNet
Links to more tham 1,000 reviewed biological science teaching resources
covering 51 biological sciences topics, sponsored by AAAS
- biotechfind
Comprehensive directory of links covering
biotechnology, bioinformatics and biofinances as well as a job exchange
- BioED
Online Biology resources for high school and
introductionary college level
- BioTK
Biotechnology portal - Market place - Europe, US, Asia
- BioTech
Life sciences resources and reference tools
- Bristol
BioMed Image Archive Collection of medical, dental
and veterinary images for use in teaching
- BSD
- Biodegradative Strain Database Database covering
microorganisms involved in biodegradation - including name of strain,
substrate that is degraded by the microorganism and additional
information
- Digital
Learning Center for Microbial Ecology The goal of
the DLC-ME and the Microbe Zoo is to help students from 7 to 107 to
learn about microbial ecology, the study of microbes in the environment
- DNA
from the beginning Multimedia primer of genetics for
high school people and laymen - Cold Spring Harbor Lab sponsored
- Fishbase
Comprehensive relational database of fish information
- GBIF
- Global Biodiversity Information Facility Portal
that allows simultaneous search over 1 million taxonomic records
- Genetic
Science Learning Center at The University of Utah
Educational resources to provide accurate and unbiased information
about topics in genetics and bioscience - designed for non-research
audiences
- Giftpflanzen
Poisonous plants - a compendium covering different aspects of poisons
in plants and herbs, their chemistry, toxicity, antidots, as well as
biological function
- MendelWeb
Educational resource for teachers and students interested in the
origins of classical genetics, introductory data analysis, elementary
plant science, and the history and literature of science
- Microbes.info
Comprehensive web site and link list of microbiology informational
resources
- MicrobeWorld
Educational website providing information about basic microbiology and
issues involving microbiology
- Molecular
Station Portal for molecular biology which contains
methods
and protocols, bioinformatics, and news categorized by DNA, RNA,
protein, and proteomics
- Molecular Toolbox
Selected collection of databases and Web-based utilities of high
usefulness for research and teaching purposes
- NCBI Bookshelf Full-text
versions of biomedical textbooks or selected chapters thereof - e.g.
Molecular Biology of the Cell, Molecular Cell Biology, Introduction to
Genetic Analysis, and Modern Genetic Analysis
- Practical Molecular Biology Methods, information and programs
for molecular biologists - russian - german project
- Protist Information Server
Photos of more than 1600 species of protists
- The
Biology Project - University of Arizona On-line
interactive resource for learning biology
- The
Tree of Life Attempt to link all known organisms
into one phylogenetic tree
- TreeBASE
Relational database of phylogenetic information sponsored by the NSF,
Harvard University Herbaria, and the University of California, Davis
- The Molecular Level Tools
for Structural Biology Education and Training
- Understanding Genetics
Education-based site aimed to inform a general audience about basic
principles of genetics
- Vascular
Plant Type Catalog Catalog of approximately 75,000
vascular plant type specimens - more than 2500 digital photographs.
Page established ny the New York Botanical Garden
- Virtual
Genetics Lab The Virtual Genetics Lab (VGL) is a
simulation of transmission genetics that approximates, as closely as
possible, the hypothesis-testing environment of genetics research
- Virtual Library of Cell Biology
Harvard's guide to cell biology on the web
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Chemistry
& Analytics
- Analytical
Chemistry Springboard List of analytical chemistry
resources on the Internet - Irgum / University of Umea, Sweden
- Bionity.com
Search engine and database for prpducts and news in the field of life
sciences
- Chemexper
Search engine to locate chemicals and suppliers
- ChemFinder
Web Server Searching for chemical compounds -
chemical, structural, and physical data
- ChemGuide Fulltext search
engine for chemistry related internet servers
- Chemical
Online Homepage for chemical process technologies
- ChemIDplus
Database of chemical structures - NLM Bethesda
- Chemieserver.de
Links to chemistry relevant information and resources on the internet
- Chemie.de
German chemistry information service
- Chemie
im Fokus Informations related with studying
chemistry and cariers in chemistry
- Cheminfo
Chemistry information resources on the internet - maintained by
Wiggins, Indiana University
- Chemistry
animations and movies on the World Wide Web Link
list for chemistry related animations
- ChemWeb
Library of searchable full-text journals, databases, newsletter (The
Alchemist, searchable index of chemistry resources on the web -
spin-off of MDL
- CombiChemLab.com
Comprehensive online information source for Combinatorial Chemistry,
High Throughput Synthesis, High and Ultra-High Throughput Screening and
Lab Automation
- Experimentalchemie.de
Chemical experiments for teaching, educational and show purposes -
german
- Diversity
Information Pages Combinatorial chemistry
information resources
- Fachinformationszentrum
Chemie GmbH Central scientific information and
documentation agency for chemistry - activities performed in close
collaboration with the DECHEMA e.V., the Deutsches Kunststoff-Institut
as well as other scientific and technical information agencies
- General Chemistry Virtual Textbook
Comprehensive virtual textbook
- Global
Instruction Chemistry Site Chemistry tutorials,
course materials, reviews, and reports
- Internet
Resources for Teachers of Chemistry Keith
Wilkinson's Page
- Molecular
Modeling for Organic Chemistry Course of eight
lectures and lecture demonstrations given by Henry Rzepa, Imperial
College
- Namensreaktionen
Chemical mane reactions - german
- NCI
Database Browser The largest public chemical
structure database with nearly 250.000 compounds
- Nobel Prices for Chemistry
Survey of activities
- Organic
Chemistry Resources Worldwide WWW resource guide for
synthetic organic chemists covering literature, bench work, structural
analysis, and communication
- organic-chemistry.org
Comprehensive portal for synthetic organic chemistry: extensive
information about name reactions, synthetic highlights, and online
journal with short reviews of organic, bioorganic, organometallic and
microwave chemistry, total synthesis of natural products and multi
component reactions
- Panopticon
Lavoisier Virtual museum of the collections of the
French chemist Antoine Laurent Lavoisier (1743-1794) scattered
throughout the world. A detailed chronology of Lavoisier's life and
works, the catalogue of Lavoisier's manuscripts, laboratory apparatus,
library and minerals, the digital edition of Lavoisier's collected
works, the bibliography on and of the French chemist as well as his
complete iconography are made available on-line
- Prof.
Blumes Bildungsserver für Chemie Large
collection of chemistry related texts and experiments especially suited
for educational purposes
- Quellen
zum Chemieunterricht Resources for chemical
education - german
- Selected Classic Papers from the History of
Chemistry Papers from the history of chemistry as
html files
- TORVS
Techniques for organic reactions, visualization, and spectroscopy
- Virtual
Chemistry 3-D simulated laboratory for the teaching
of chemistry
- Virtual
Mass Spectrometry Laboratory The Virtual Mass
Spectrometry Laboratory (VMSL) is an interactive, Internet-educational
tool currently under development through a grant awarded in 1999 from
the National Science Foundation (DUE-9950867). The VMSL is a mechanism
to teach those interested in mass spectrometry about this powerful
analytical technique by using state-of-the-art Internet approaches
- Webercises
Extensive collection of links to various areas of chemistry
Back to Scientific Resources
Medicine
- AIDA
on-line Educational simulator of insulin and dietary
adjustment in insulin-dependent diabetes mellitus (IDDM)
- Allergy
Informations Service from Glaxo Wellcome
- Digital Anatomist Project
The long term goal of the Digital Anatomist project is an anatomy
information system that is available from any desktop computer on the
network
- Genetics
Home Reference National Library of Medicine's web
site for consumer information about genetic conditions and the genes or
chromosomes responsible for those conditions
- Interactive Anatomy and Physiology Resources Link list to sites illustratingthe function of the human body - maintained by Extreme Body Workout
- Info.Med Medical information service - guest access possible
- Introduction to Cardiothoracic Imaging
Illustrated tutorial to heart and lung anatomy
- Medical Resource Reviews Database Database containing
summaries and reviews of electronic medical information resources covering among others Anatomy, Physiology, Internal Medicine, and Pharmacology
- Medscape Online resource for medical information - Medline, Toxline, Aidsline access
- Merck
Manual of Medical Information--Home Edition Based on
The Merck Manual of Diagnosis and Therapy, commonly referred to as The
Merck Manual, transformed into commonly used English while retaining
the vital information about diseases, diagnosis, prevention, and
treatment
- Online Nurse Practioneer Programs Listing of every accredited school in the US offering a degree in Nurse Practitioner Programs
- The Internet Pathology Laboratory
for Medical Education Web resource that includes over 1900 images along with text, tutorials, laboratory exercises, and
examination items for self-assessment that demonstrate gross and microscopic pathologic findings associated with human disease conditions
- The Ultimate List of Anatomy and Physiology Resources Comprehensive link list covering medical, biological as well as chemical areas
- Virtual Autopsy
Mini-tutorials on aspects of anatomy
- Who
Named It? Comprehensive dictionary of medical
eponyms - including bibliographic information
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Pharma
- ChemBank
Collection of data about small molecules and resources for studying
their properties, especially their effects on biology
- Drug
Discovery Online Site devoted exclusively to drug
discovery and early-stage drug development - buyer's guide, feature
stories, case studies, industry news, and newswire feeds related to the
science and business of discovering new drugs
- etc.
The Enzyme Technology Consultancy - Reports for the diagnostics industry
- HTScreening.net
High throughput screening (HTS) web portal
- Medtrial.com
Information source for clinical trials
- Pharmaceutical
Industry.info List of Pharmaceutical companies /
suppliers and projects, pharma related press releases, news and
resources
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Physics,
Maths & Engineering
Back to Scientific Resources
Back to Index
Back to Index
Patent-Retrieval
Databases
- Agricultural
Biotechnology Intellectual Property Database that
identifies and describes U.S. utility patents on inventions in
biotechnology and other biological processes with issue dates between
1976 and 2000 that are used in food and agriculture
- bustPATENTS
Commercial Internet Patent News Service, a mostly daily email news
service covering patent, technology and economic issues. Partly free
information
- DEPAnet
Patentserver of the Deutsches Patent- und Markenamt - gateway to the
esp@cenet
- Derwent
Scientific & Patent Information WWW Server
Commercial patent information
- DPMApatentblatt
Internet-Server of the Bundesdruckerei GmbH, containing data of the
Patentblatt of the Deutschen Patent- und Markenamtes in an electronic
researchable format. This site contains the original data from the
German Patent and Trademark Office (DPMA) from the last 24 months
starting from January 1997
- Delphion
Intellectual Property Network Full text of two
million patents (January 1971 to present) - formarly IBM Patent Server
- Deutsches
Patent- und Markenamt German Patent and Trademark
Office - free as well as cost bearing information
- Eidgenössisches
Amt für Geistiges Eigentum Swiss Federal
Institute for Intellectual Property - patent and trademark databases
and informations
- European
Patent Office Links to various patent databases and
patent journals - gateway to the esp@cenet
- freepatentsonline
Full text of US patents starting from number 4000000 - images
downloadable in pdf format
- PatSearch
Commercial collection of searchable full-text patent data of granted
patents and published patent applications
- Protys
Commercial database of full text and classifications of unexamined
patent applications in the Japanese Patent Office
- Questel-Orbit
Scientific databases & patents
- Selected resources for patents, inventions,
and technology transfer Links to US and European
patent databases
- STO's Internet Patent Search System
Searching of US patents by subject (classification codes) for all years
(1790 - present. Abstracts 1981 - 1989 are displayable
- USPTO
Web Patent Databases Free searchable US patent
databases covering the years 1976 - 1999: US Patent Full Text Database,
US Patent Bibliographic Database, and AIDS Patent Database
- USPTO
Web Trademark Databases Starting point for the
USPTO's original free trademark database - will be replaced by TESS,
the Trademark Electronic Search System "tess.uspto.gov"
Back to Patents & Trademarks
Additional Patent
Information
Back to Patents & Trademarks
Trademarks
Back to Patents & Trademarks
Back to Index
Microarrays
- ArrayExpress
Public EBI sponsored repository for microarray based gene expression data. Currently the EBI is establishing a pilot database containing
microarray gene expression data that are available publicly
- ABRF Microarray Research Group
Microarray Research Group in the framework of the Association ob
Biomolecular Resource Facilities
- BASE
project page Open source web-based comprehensive
database server to manage the massive amounts of data generated by
microarray analysis
- BioChipNet
NMI / BMI website on biochip technologies
- Brown
Lab Patrick O. Brown Lab homepage
- Diagnostic
Microbial Microarrays Microbial microarray projects carried out at the Department of Biotechnology of the Austrian Research
Centers, Seibersdorf, Austria
- DNA Microarray Methodology - Flash Animation Animation that demonstrates how DNA microarrays are performed
- EMBL-EBI The microarray
informatics group at the EBI addresses the problem(s) of managing,
storing and analysing microarray data
- Gene-Chips
Leming Shi's Array Page
- GermOnline
Cross-species community annotation knowledgebase that provides microarray data relevant for the mitotic and meiotic cell cycle as well
as gametogenesis
- Genome Consortium for Active Teaching (GCAT)
Initiative to allow college students to work with DNA microarrays
- Lab-on-a-Chip News server
for microarray and microfluidics activities
- Longhorn
Array Database - LAD The LAD is a MIAME compliant
microarray database that operates on PostgreSQL and Linux. It is a
fully open source version of the Stanford Microarray Database (SMD),
one of the largest microarray databases.
- Microarrays
Research Today Free monthly online journal that
collates and summarizes the latest research about Microarrays,
including details on experiments, designs, statistics, analysis,
software
- microarrays.com
Vanderbilt microarray core facility
- MicroArray Quality Control (MAQC) Project
The project involves six FDA Centers, major providers of microarray
platforms and RNA samples, EPA, NIST, academic laboratories, and other
stakeholders. It aims to establish QC metrics and thresholds for
objectively assessing the performance achievable by various microarray
platforms and evaluating the advantages and disadvantages of various
data analysis methods
- MUSC DNA Microarray Database
Repository for DNA microarray data generated by MUSC investigators. At
the discretion of the contributors, DNA microarray data is placed into
the public domain and can be viewed and downloaded via the web
interface - Medical University of South Carolina
- ProteomicsSURF
- Microarrays Comprehensive list of links to DNA and
protein microarray activities and literature
- University
of Geneva Hospitals - Genomic Research Laboratory
Microarrays in prokariotic research
- Y.F.
Leung's Functional Genomics - Microarray List of
links to microarray related activities
- Advanced
Array Technology SA (AAT) Catalog and made-to-order
chips for gene expression or DNA analysis. Coated slides, microarray
reader
- Accelr8
Technology Co. Surface coatings for DNA and protein
microarrays to provide selective biomolecule binding with low
non-specific adsorption
- Affymetrix
Catalog and made-to-order chips for gene expression or DNA analysis.
Human, mouse, rat, yeast and others. Photolithography based synthesis
of oligonucleotide microarrays; contact printed microarrays, reader,
software
- Agendia
Gene expression profiling service using DNA microarray technology
- Agilent
Technologies Catalog and made-to-order chips for
gene expression. Human, mouse, rat, yeast, arabidopsis and others.
On-surface synthesis of oligonucleotide microarrays, reader, software
- Amersham
Biosciences / GE Healthcare Whole genome expression
arrays of human, rat, and mouse. Reader, software
- Aros
Gene expression profiling service using DNA microarray technology
- ArrayIt
/ Telechem Catalog and made-to-order DNA chips:
Yeast, worm, fly, mouse, rat and human. Buffers, surfaces, protein
microarrays, service
- Array-On
Microarray-based SNP analysis
- Asper
Biotech Coated slides for DNA and protein microarrays
- Axon
Microarray reader and image analysis software
- Azign
Catalog chips for drug profiling and drug discovery. Human, mouse,
specific targets
- BD Biosciences Clontech
ATLAS human cDNA expression array on nylon membranes and on glass
chips, antibody microarrays
- BF-BIOlabs
Custom-made microarrays
- BioCat
Tissue microarrays
- Biocept
Chips with 3D surface, readout system
- BioSource
Protein Microarrays for signal transduction
- Bio-Rad
Microarray printer, reader and chips
- Ciphergen
SELDI protein arrays
- Clondiag
Chip Technologies Array Tube system
- Combimatrix
Semiconductor-based in situ synthesis platform for customizable DNA
microarrays
- Corning Life Sciences
Coated slides for microarrays
- Display
Systems Biotech cDNA microarray slides
- Diagnostic
Microbial Microarrays Homepage of the microbial
diagnostic microarray projects carried out at the Department of
Biotechnology of Seibersdorf research, Austria
- Eppendorf
Coated slides for DNA microarrays, DualChip microarrays for specific
applications like toxicogenomics, stress and ageing, receptors and
cellular processes
- Erie
Scientific Company Coated slides for microarrays
- Eurogentec
Protein, peptide, and antibody microarray printing services
- Exiqon
Microarrays for miRNA determination
- Exonhit
Therapeutics service to monitor splice variaants
using arrays codeveloped with Affymetrix
- Expression
Analysis Microarray analysis, bioinformatics, and
expression gene profiling services
- Full
Moon BioSystems Polymer coated slides for
oligonucleotide and protein microarrays
- Genewave
Microarrays using fluorescence amplifying substrates
- Gene
Logic Flow-through chips
- ICB
- Institut für Chemo- und Biosensorik GmbH
Low density DNA microarays
- Invitrogen
Detection and imaging system
- Jivan
Biologics Splice variant microarrays for drug
development from target discovery, target validation and functional
genomics to predictive toxicology, personalized medicine and the search
for clinical markers in blood. Service and catalog products
- JERINI
PepSpot system: peptide and peptidomimetic libraries synthesized
covalently on continuous cellulose membranes
- Lumera
Polymer coated slides
- Microarrays
Inc Custom microarray printing services
- Miltenyi
Biotec Catalog and made-to-order chips for gene
expression. Apoptosis, cytokines, kinases, cancer, and others
- Miragen
3D slides for protein microarrays
- MRC Geneservice
Not-for-profit contract research organization and biological resource
centre supported by the Medical Research Council of the United Kingdom
- MWG
Catalog and made-to-order chips for gene expression. Human, zebrafish,
and others
- NimbleGen
Systems Catalog and made-to-order chips. Human, rat,
mouse, fruit fly, arabidopsis, yeast, large number of microbial
organisms - Collaboration with Affymetrix
- Novagen - Merck Biosciences
Low density antibody microarrays. Cytokines
- MWG
Catalog and made-to-order chips for gene expression. Human, zebrafish,
and others
- NUNC
Polymer and glass slides for nucleic acid, protein, and tissue
applications
- Pepscan
Systems Peptide microarrays
- Phalanx
Biotech Group Human genome array
- Phase-1
Molecular Toxicology Catalog chips. Human, rat,
canine, specific pharmacological targets; Affymetrix service provider
- Procognia
Functional protein microarrays
- Quantifoil
Coated slides for microarrays
- Qiagen - Oligo Microarray Database
Relational database offering comprehensive information about QIAGEN's
Array-Ready Oligo Sets. The database provides information on each
designed oligo and its representative gene or ORF
- Randox
Protein microarrays
- Research
Genetics Human and rat cDNA microarrays on membranes
- Roche
Molecular Diagnostics Diagnostic microarrays. CYP
450 and others
- Scienion
DNA and protein microarrays, spotters, surfaces, and services
- Schleicher & Schuell BioScience
Coated slides for DNA and protein microarrays, antibody microarray
- Schott
nexterion Coated slides for DNA and protein
microarrays
- Sigma-Genosys
Oligonucleotide libraries, nylon-membrane DNA arrays for gene
expression profiling
- Sirs
Lab GmbH Customized DNA microarrays
- STMicroelectronics
Lab-on-a-chip with integrated microarray
- Superarray
Biosciences Focused microarrays to study biological pathways
- U-Vision
Biotech Catalog chips, coated slides, spotting
services
- Takara
Mirus Bio Catalog chips. Human, rat, mouse,
arabidopsis, Escherichia coli
- Vialogy
Compute-on-demand DNA microarray analysis service for highest quality
data derived from small sample sizes
- XanTec
Coated slides
Back to Bioanalytics
Field
Flow Fractionation
Back to Bioanalytics
Mass
Spectrometry
Back to Bioanalytics
Nanotechnology
- CC
NanoChem Center of competence nanotechnology -
german interdisciplinary network of nanotechnology activities
- Exploring the Nanoworld
Educational website to investigate the frontiers of the nanoworld
- Nanomat
Superregional NETWORK for Nanotechnology Materials - sponsored by the
german Ministry of Research
- Nanonet
Information on aspects of the nanoworld - sponsored by the bmb+f
(german federal research department) and the VDI (german engineering
association)
- NAS Computational Molecular Nanotechnology
Survey of NASA Ames molecular nanotechnology activities - publications,
images, links
- Nanotechnology
Database Up-to-date sources of information on
nanotechnology in the following areas: major research centers, funding
agencies, major reports and books
Back to Bioanalytics
Back to Index
Global
- 2Can
Support Portal Bioinformatics Introductions to
basic concepts in molecular and cell biology and bioinformatics. The
main emphasis is placed on making it as easy as possible for the user
to understand which tools and databases are available from the EBI and
from sites belonging to its collaborators
- Bioinformatics Links Directory
The Bioinformatics Links Directory features curated links to molecular
resources, tools and databases. All of the resources are free or
available for a nominal fee - UBC Bioinformatics Centre
- BIOINFORMATICS.PHRMA.ORG
Page of the Pharmaceutical Research and Manufacturers of America
- bioinformatik.de
Webdirectory for bioinformatics
- CMS
Molecular Biology Resource Compendium of electronic
and Internet-accessible tools and resources for Molecular Biology,
Biotechnology, Molecular Evolution, Biochemistry, and Biomolecular
Modeling. Among others: PCR primer selection, primer databases, PCR
reaction setup, and PCR protools - Prediction of melting transitions of
dsRNA, DNA or RNA/DNA hybrids
- HSLS Online Bioinformatics Resources
Collection Annotated information and guided links to
more than 1500 open sources bioinformatics databases and software tools
- Information
Technology + Buyer's Guide Webdirectory for IT
products and services with relevance of life sciences - Bio-IT World
Back to Bioinformatics
Microarrays
- A 'module map' showing conditional activity
of expression modules in cancer Integrated analysis
of a compendium of 1975 published microarrays spanning 22 tumor types.
Expression profiles in different tumors are described in terms of the
behavior of modules, sets of genes that act in concert to perform a
specific function.
- BRB
ArrayTools Integrated package for the visualization
and statistical analysis of DNA microarray gene expression data - NCI
- Cyber-T
Statistics program with a web interface that can be conveniently used
on high-dimensional array data for the identification of statistically
significant differentially expressed genes. It employs statistical
analyses based on simple t-tests that use the observed variance of
replicate gene measurements across replicate experiments, or
regularized t-tests that use a Bayesian estimate of the variance among
gene measurements within an experiment - University of California,
Irvine, Functional Genomics Center
- CMS
Molecular Biology Resource Compendium of electronic
and Internet-accessible tools and resources for Molecular Biology,
Biotechnology, Molecular Evolution, Biochemistry, and Biomolecular
Modeling. Among others: PCR primer selection, primer databases, PCR
reaction setup, and PCR protools - Prediction of melting transitions of
dsRNA, DNA or RNA/DNA hybrids
- DNA-Chip Analyzer (dChip)
Software package implementing model-based expression analysis of
oligonucleotide arrays and several high-level analysis procedures -
Harvard School of Public Health
- GEDA Gene Expression Data
Analysis Tool Users can perform a number of simple transformations,
finds differentially expressed genes using a variety of simple tests
and performs agglomerative clustering on the samples using the retained
genes as features with a user-selected clustering algorithms -
University of Pittsburgh Cancer Institute
- GEDS Gene Expression Data
Simulator - University of Pittsburgh Cancer institute
- GenMAPP
Gene MicroArray Pathway Profiler - Computer application designed to
visualize gene expression data on maps representing biological pathways and groupings of genes
- GeneXPress GeneXPress is
a visualization and analysis tool for gene expression data, integrating
clustering, gene annotation, and sequence information. It allows to
load clustering results and automatically analyze them for significance
of functional groups through correlation with functional annotations
(e.g. Gene Ontology) and for enrichment of motif binding sites (e.g.
TRANSFAC motifs).
- Genomics
and Bioinformatics Group (GBG) web site
Bioinformatic program packages, microarray data analysis information,
and molecular databases for genomic and proteomic research: MatchMiner,
GoMiner, MedMiner, CIMminer, MIMminer
- GSCope Suite of
bioinformatics software packages: SOM clustering and gene-ontology
analysis of microarray data, integrated viewer for biomolecular network
graphs, viewing and analyzing expression data on biological pathways
- High-density
Array Pattern Interpreter (HAPI)
Method for interpreting the conceptual
similarities of a cluster or group of genes that have been identified
by a statistical methods such hierarchical clustering, Self-Organizing
Maps, "gene shaving", k-means clustering, etc.
- L2L
Microarray Analysis Tool Tool for discovering hidden
biological significance
in microarray expression data
- Module Map Tool to parse
microarray data to identify groups of genes that work in concert during
normal activities or in cancerogeneous cells
- OligoArray
2.0 Software that computes gene specific
oligonucleotides for genome-scale oligonucleotide microarray
construction
- ONCOMINE
Camcer Microarray Database Bioinformatics
infrastructure for cancer genomics research that provides tools to
query and visualize cancer microarray data for a gene or cancer type of
interest
- ProMAT - Protein Microarray Analysis Tool
Software module for data analysis of protein microarrays
- PubGene
Web Tools On-line packages for up-to-date gene
data, protein and mutation data, import and export options, clustering
methods, disease, process, and function associations and advanced
graphics
- TM4
Online Suite of tools that consist of Microarray
Data Manager (MADAM), TIGR_Spotfinder, Microarray Data Analysis System
(MIDAS), and Multiexperiment Viewer(MeV), as well as a Minimal
Information About a Microarray Experiment(MIAME)-compliant MySQL
database - TIGR
Back to Bioinformatics
Oligonucleotide Primer
Synthesis / Positioning
- ALIGN Query ALIGN query
using sequence data at the GENESTREAM network server IGH Montpellier, F
- ExonPrimer
Perl script that helps to design intronic primers for the PCR
amplification of exons - Tim Strom, Institute for Human Genetics,
Technical University of Munic
- GeneFisher Interactive
PCR primer design - University of Bielefeld, D
- IDT SciTools
Oligonucleotide sequence designer tools - for primers, RNAi and
microarray probes
- LALIGN Query LALIGN query
using sequence data at the GENESTREAM network server IGH Montpellier, F
- NetPrimer Free web-based
interface using the latest primer design algorithms - Premier Biosoft
- OligoAnalyzer
Oligonucleotide parameter calculator from IDT BioTools
- Oligo Calculation
Oligonucleotide parameter calculator from Genset
- Oligonucleotide Properties Calculator
Comprehensive calculator with open algorithms
- Oligo Calculator Simple
melting point calculator
- PRIDE
Primer Design for large-scale projects in sequencing, PCR, and DNA
array design
- The Primer Generator
Automated generator of primers for site-directed mutagenesis
- Primer3 Pick primers from
a DNA sequence - Whitehead Institute for Biomedical Research
- Primer Design Java applet
by Luca Ida Giovanni TOLDO
- Primer
Selection Interface to a PCR primer selection
program based on xprimer - University of Minnesota
- POLAND Prediction of
melting transitions of dsRNA, DNA or RNA/DNA hybrids
- Primer3 Primer selection
software developed at the Whitehead Institute
- Primer
Selection Interface to a primer selection program
based on Xprimer
- QPPD
The Quantitative PCR Primer Database (QPPD) provides information about
primers and probes that can be used to quantitate human and mouse mRNA
by reverse transcription polymerase chain reaction (RT–PCR)
assays. All data has been gathered from published articles, cited in
PubMed.
- Tinoco Plots Simple tool
to investigate possible secondary structure elements in RNA or DNA
single strands
Back to Bioinformatics
Nucleic
Acid Structures & Sequences
- Beacon Designer Free Edition Free on-line qPCR design software that can be used to screen SYBR® Green primers and TaqMan® probes for possible secondary structures such as dimers or hairpins
- GeneDesign
Web-based program for the design of synthetic genes. It consists of
several modules that automate the tasks associated with the
manipulation of synthetic sequences
- InstaSeq Tool to search
the World-Wide-Web for any fragment of DNA, RNA or Protein Sequence
- RNA mfold RNA folding
server of Michael Zuker, Washington University in St. Louis -
calculation of secondary RNA structures
- SEQUEROME Web-based
sequence profiling tool of BLAST results allowing to extract the
maximum out sequence alignment reports
- Sfold Sfold predicts probable RNA secondary structures, assesses target
accessibility, and provides tools for the rational design of RNA-targeting nucleic acids
- SMS
Collection of JavaScript programs for generating, formatting, and
analyzing short DNA and protein sequences
- UNAFold Unified Nucleic Acid Folding and hybridization package - access to mfold & DINAMelt RNA & DNA folding calculation software
- VISTA
Comprehensive suite of programs and databases for comparative analysis
of genomic sequences
- WatCut On-line tool for
restriction analysis, silent mutation analysis, and SNP analysis
Back to Bioinformatics
Proteins
- AbMiner
Relational database of information on antibodies that we have screened
specificity against the NCI-60 cancer cell lines. The database includes
results of screenings by western blot, practical information for
purchase, identifiers such as UniGene cluster and gene name for each
antibody, and out-links to major public bioinformatics resources
- BIND
Biomolecular Interaction Network Database - a database designed to store full descriptions of interactions, molecular complexes and pathways
- DeepView
Visualization, comparison, analysis, and modeling of proteins - former
SwissPDB Viewer
- Molecular Docking Web
Software for automated docking and scoring of flexible ligands to
receptors
Back to Bioinformatics
Prediction
of Biological Function
- AmiGO
HTML-based browser for Gene Ontology - established by the Gene Ontology
Consortium
- BioModels
Database The BioModels Database is a new effort to develop a data resource that will allow biologists to store, search and retrieve published mathematical models of biological interests. The models in the BioModels Database are annotated and linked to relevant data resources, such as publications, databases of coumpounds and pathways, controlled vocabularies, etc.
- eGOn
eGOn (explore Gene Ontology) is a tool that facilitates use of biological background knowledge in analysis of genes selected from high throughput analysis like e.g microarray analysis. Lists of identifiers containing i.e. differentially expressed genes, are submitted to our annotation database, and eGOn automatically extends the list with Gene Ontology (GO) terms annotated to these genes.
- E-Cell
The E-Cell Project is an international research project aiming at
developing necessary theoretical supports, technologies and software
platforms to allow precise whole cell simulation.
- Gepasi
Software package for modeling biochemical systems. It simulates the
kinetics of systems of biochemical reactions and provides a number of
tools to fit models to data, optimize any function of the model,
perform metabolic control analysis and linear stability analysis.
- GRAM - Genetic RegulAtory Modules
Algorithm that identifies modules, collections of genes that share
common regulators as well as expression profiles. The algorithm
combines direct information from DNA binding experiments with indirect
functional information from expression experiments.
- LocusLink
Single query interface to curated sequence and descriptive information
about genetic loci. It presents information on official nomenclature,
aliases, sequence accessions, phenotypes, EC numbers, MIM numbers,
UniGene clusters, homology, map locations, and related web sites.
- Onto-Express
Tool to automatically translate lists of genes found to be
differentially regulated in the condition under studyl into functional
profiles characterizing the impact of the condition studied
- Pandora
Protein ANnotation Diagram ORiented Analysis - protein-clustering tool
to help to identify their mode-of-action
- PubGene
Web tools for the analysis of expression data in the context of
literature or sequence associations
- The
ConSurf server Identification of Functional Regions
in Proteins by Surface-Mapping of Phylogenetic Information
- Virtual
Cell Modeling cell biological processes. The
approach associates biochemical and electrophysiological data
describing individual reactions with experimental microscopic image
data describing their subcellular locations. A transparent mathematics
framework develops numerical simulations, and results can be analyzed
as images. Developed by the National Resource for Cell Analysis and
Modeling (NRCAM)
- 3d
Mind Tools Tools for modeling pharmacological
activity using neuronal networks
Back to Bioinformatics
Varia
- Argo
Java Tool for visualizing and manually annotating whole genomes
- BioLinux
Free bioinformatics software tools
- Chemical
Structure Searching Servers Access to National
Library of Medicine's information databases on drugs, pesticides,
environmental pollutants, and other potential toxins
- ELECTRAS Web-based
electronic data analysis service for the mathematical analysis of
numerical data sets
- Interactive Statistical Pages
Powerful, conveniently-accessible, and free multi-platform statistical
software package. Links to online statistics books, tutorials,
downloadable software, and related resources
- IUBio
Archive for Biology Data and Software Indiana
University archive of biology data and software, established in 1989 to
promote public access to freely available information, primarily in the
field of molecular biology
- NCBI
Structure The Structure Group at NCBI has created an
up-to-date database of 3-dimensional macromolecular structures along
with a rich set of tools for comparing and visualizing structures and
sequences, searching for similarities, and associating these data with
other information sources such as taxonomy and literature databases
- Visual
Molecular Dynamics Free downloadable software
package for modeling proteins, lipid bilayers, and nucleic acids
- Webcutter Determination
of the restriction maps - automatic sequence search-and-entry from
NCBI's GenBank
- 2D and
3D Structural Information from DTP About half a
million structures of the Developmental Therapeutics Program of the NCI
Back to Bioinformatics
File
Formats
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Genomics, Proteomics
& Transcriptomics
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Global Access to Databases
- Blast Search BLAST Search
using sequence data at the GENESTREAM network server IGH Montpellier,
France
- Databases
on Medicine and Molecular Biology Comprehensive
annotated link list to genomics, pharmacology, toxicology and related
databases
- Entrez, The Life Science Search Engine
Cross-database search page for all NCBI Web and FTP sites - NCBI
- Entrez Nucleotide Access
to Genbank - NCBI
- FASTA Search FASTA Search
using sequence data at the GENESTREAM network server IGH Montpellier,
France
- GenBank Database Query
Text and Similarity Searching - National Center for Biotechnology
Information
- GeneStream2
Nucleic acid sequences from Genbank, EMBL, Genbank-new, EMBL new and
GB-expressed sequence tag databases are concatenated and duplicate
entries removed to produce a single dataset. The current size of the
non-redundant database is over 3.0 million sequences. Its size requires
that access to search this data base by some search programs is
resticted to a mail only service.
- OLCODIBS
- On Line Colection of Databases in the Biological Sciences
Broad structured collection of links to life science databases
- Sequence
Retrieval System EMBL service for a combined search
of SWISS-PROT, EMBL, TrEMBL, GenBank, etc.
- SSEARCH Search SSEARCH
Search using sequence data at the GENESTREAM network server IGH
Montpellier, France - email service only
Back to Genomics, Proteomics & Transcriptomics
Biomarker
Back to Genomics, Proteomics & Transcriptomics
Genomics
- addgene
Non-profit plasmid repository operating a plasmid repository for the research community
- ARS Genome Database Resource
Set of agricultural genome databases. They include plant genes,
chromosome maps, DNA fingerprints, beneficial traits, and crop varieties
- Atlas of Nucleic Acid Containing Structures
Extremely comprehensive database of the Nucleic Acid Database Project
covering DNA structures, RNA structures, unusual structures,
protein/DNA complexes, and protein/RNA complexes
- Bacteriophage
Home Page Bacteriophage T4 and other phages home
page - Evergreen State College
- BGMUT
- Blood Group Antigen Gene Mutation Database
Database of variations in the genes that encode antigens of blood group
systems
- Cancer
Genome Anatomy Project Survey of commonly used
approaches to high throughput, comprehensive analysis of relative
transcript expression levels
- Caenorhabditis
elegans WWW Server Webserver for Caenorhabditis
elegans research
- Cancer Cell Line Project
Characterization of 600 tumor cell lines with respect to in vitro
acquired additional genetic abnormalities
- CGEMS
- Cancer Genetic Markers of Susceptibility
Genome-Wide Association Study (GWAS) on over 500,000 genetic variants
to determine their role in cancer susceptibility
- Consensus CoDing Sequence (CCDS) project
Annotated high quality core set of human protein-coding regions
- Cyanosite Webserver for
cyanobacterial research
- Comparative
RNA Web Site Information on structure and evolution
of especially ribosomal and transfer RNAs
- DG
CST - Disease Genes Conserved Sequence Tags Database
collection of conserved sequence elements, identified by a systematic
genomic sequence comparison between a set of human genes involved in
the pathogenesis of genetic disorders and their murine counterparts
- DHGP -
Deutsches Humangenomprojekt German Human Genome
Project - Resource Center
- DNA-Binding Motifs
Illustration of the four major motifs found in DNA-binding proteins
- DISC
DNA Information and Stock Center, National Institute of Agrobiological
Resources,
Tsukuba, Japan
- EGAD
- The Expressed Gene Anatomy Database Non-redundant
set of human transcript (HT) sequences and non-human transcript (ET)
sequences
- EST Clone
Resources American Type Culture Collection (ATTC)
cDNA collection including clones deposited by TASC/I.M.A.G.E.
- E.coli
Index Comprehensive guide to information relating to
Escherichia coli
- FVII
Mutation Database Searchable database covering
mutations of Factor VII
- genepaint.org
Digital atlas of gene expression patterns in the mouse
- Gene Expression Database Query
Database of human and mouse gene activities in various cells and
tissues - Novartis Research Foundation
- Genlink
Multimedia database resource for human genetics - Washington University
St. Louis
- Genlink
Multimedia database resource for human genetics - Washington University
St. Louis
- GeneSeeker
Search engine to interrogate different databases simultaneously, given
a known human genetic location and expression/phenotypic pattern
- genome
gateway Comprehensive genomics web resource
established by Nature and Nature Genetics
- Genome
Reviews Standardised and comprehensively annotated
view of the genomic sequence of organisms with completely deciphered
genomes - EMBL-EBI
- Genetic Association Database
Archive of human genetic association studies of complex diseases and
disorders
- geo
- Gene Expression Omnibus Public gene expression
data collection - launched by NCBI. Gene expression data repository and
online resource for the retrieval of gene expression data from any
organism or artificial source. Gene expression data from multiple
platforms, including spotted microarray, high-density oligonucleotide
array , hybridization filter and serial analysis of gene expression
(SAGE) data, will be accepted, accessioned, and archived as a public
data set.
- GOLD
- Genomes OnLine Database Information covering
complete and ongoing genome projects around the world
- Gottschling Lab Homepage
Collection of core yeast protocols
- GeneCards Concise
information about the functions of all human genes that have an
approved symbol (gene listing)
- Gramene
Curated, open-source, Web-accessible data resource for comparative
genome analysis in the grasses
- HapMap
Multi-country effort to identify and catalog genetic similarities and
differences in human beings. The haplotype map of the human genome, the
HapMap, will describe the common patterns of human DNA sequence
variation.
- Harvard
Medical School - George M. Church Laboratory & Lipper Center
for Computational Genetics Computational &
comparative functional genomics
- Hembase
Information about genes transcribed in blood cells
- HemoPDP The Hematopoiesis
Promoter Database (HemoPDB) is as a publicly available, web-based
information resource focused on transcriptional regulation in
hematopoiesis
- Human
Genome Project Information Information about the
U.S. and worldwide Human Genome Project, research in progress site
- Human
Genome Resources Links to key genomic databases,
maps, and markers for all 23 pairs of human chromosomes. LocusLink -
starting place for a quick summary of all top-level information about a
gene. Launched by the National Center for Biotechnology Information
(NCBI)
- hum-molgen
Communication forum in human molecular genetics
- IDbases
- databases for immunodeficiency-causing mutations
Large collection of databases for immunodeficiency-causing mutations
- International
Sequencing Consortium Large-scale Sequencing Project Database
Web site to provide a single, central site for the scientific community
and the public to have access to up-to-date information about animal,
plant and other eukaryotic genomic sequencing projects
- Making PCR Archive of key PCR papers and discussion forum
concerning this technology
- Mapping the Icelandic Genome
An ANTHROPOLOGY of the scientific, political, economic, religious, and ethical issues surrounding the deCode project and its global
implications
- Mouse Encyclopedia Index About 20000 end sequenced cDNA
clones compiled by the Genome Exploration Research Group of RIKEN (Japan)
- National
Center for Biotechnology Information - Genes and Disease Map
Physical maps with identified disease-causing genes
- NCBI
Reference Sequence Project Non-redundant collection
of naturally-occurring biological molecules
-
NDB - Nucleic Acid Database Project Atlas of nucleic
acid containing structures, archives, searching options
- NIA/NIH
Mouse Genomics Home Page NIA Mouse cDNA Project /
NIA Mouse t-complex Genome Sequencing Project
- Oncogenomics Normal Tissue Database
High-density gene expression database derived from 42,000 clone cDNA
microarrays containing 18,927 unique genes for 158 normal human samples
from 19 different organs of 30 different individuals
- PicSNP
Catalog of non-synonymous SNP (Single Nucleotide Polymorphism) in the
human genome retrieved from annotations in the draft sequence available
in GenBank
- Probe Database The NCBI
Probe Database is a public registry of nucleic acid reagents designed
for use in a wide variety of biomedical research applications, together
with information on reagent distributors, probe effectiveness, and
computed sequence similarities
- PubMatrix
Tool to rapidly and systematically compare any list of terms against
any other list of terms in PubMed. It reports back the frequency of
co-occurrence between all pairwise comparisons between the two lists as
a matrix table. Lists of terms can be anything: gene names, diseases,
gene functions, authors etc.
- RDP -
Robosomal Database Project Provision of ribosome
related data services to the scientific community, including online
data analysis, rRNA derived phylogenetic trees, and aligned and
annotated rRNA sequences
- repairGenes
Site containing information about DNA repair genes from a set of
selected species. The information is organised by organism and by
biological process term as defined by the Gene Ontology (GO) project
- RiboWEB The RiboWEB is a
knowledge base containing templates (or structured representations) for
the most common experiments used to study the structure of RNA/Protein
complexes. It is currently populated with information (almost 5800
individual observations) from 150 articles about the 30S ribosomal
subunit in procaryotes
- RNA
Interference siRNA Database and Resources for RNA
Interference Studies
- rrndb
Database that provides information pertaining to the number of rRNA
operons contained on the genomes of prokaryotic microorganisms in a
phylogenetic context
- SAGEmap
Information on SAGE libraries and access to the data produced from
these libraries
- SAGE
Genie SAGE Genie uses a new analytical method of
reliably matching SAGE tags to known genes. Based on this tag to gene
mapping, the website visualizes human gene expression analysis in
tissues or individual libraries using displays that are highly intuitive
- SAGE -
Serial Analysis of Gene Expression Genzyme molecular
oncology (GMO) homepage for academic SAGE applications
- SEGE - Single Exonic Genes in Eukaryotes
Database Collection of gene sequences that are
annotated to have single exon structure in Genbank feature table
- SNPs.com
A site dedicated to the creation, collection and dissemination of
information pertaining to single nucleotide polymorphisms (SNPs),
sponsored by Orchid Biocomputer, Inc
- The
Genome Channel Atlas for finding genes - links to
sequencing centers for 24 organisms
- The
tmRNA Website Links to tmRNA sequences of about 250
bacteria
- TubercuList
Collection and integration of various aspects of the genomic
information from M. africanum, M. bovis, M. bovis BCG, M. canetti, M.
microti, and above all, M. tuberculosis. TubercuList provides a
complete dataset of DNA and protein sequences derived from the paradigm
strain M. tuberculosis H37Rv, linked to the relevant annotations and
functional assignments.
- UKNCC
United Kingdom National Culture Collection
- The
Whole Mouse Catalog The Web site serves as a central
place to find numerous Internet resources of particular interest to
scientific researchers using mice or rats in their work
- Yeast Transformation Homepage
Collection of protocols and tips for the rapid introduction of DNA into
yeast
- Virtual
Genome Center Access to tools and databases for
molecular biologists
- Botanical Databases
- coliBASE
Online database for E. coli, Salmonella and Shigella comparative
genomics
- CUTG Codon usage
tabulated from gene bank
- dbSNP
NIH database of human genetic variation
- DDBJ
- DNA Data Bank of Japan All known nucleotide and
protein sequences
- EBI
Databases European Bioinformatics Institute
- EMBL
Nucleotide Sequence Database All known nucleotide
and protein sequences
- Ensembl
Annotated information on eucariotic genomes
- GDB -
The Genome Database International collaboration in
support of the Human Genome Project
- GenBank
All known nucleotide and protein sequences
- Genewindow
DNA browser that allows to scroll through a particular gene nucleotide
by nucleotide, identifying SNPs and other landmarks like protein-coding
segments
- GOBASE
GOBASE is a taxonomically broad organelle genome database that
organizes and integrates diverse data related to organelles with a
focus on the mitochondrial and chloroplast subset of data
- HGMG -
Human Gene Mutation Database at the Institute of Medical Genetics in
Cardiff Database of known (published) gene lesions
responsible for human inherited disease
- HGVbase
HGVbase (Human Genome Variation database)is a database of intra-genic
(promoter to end of transcription) single nucleotide polymorphisms -
hosted by the Center for Genomics and Bioinformatics, Karolinska
Institute, Stockholm, Sweden
- HIV
Sequence Database Access to databases, alignments,
and tools and interfaces produced at Los Alamos National Laboratories
- HuGEIndex Database The
Human Gene Expression Index (HuGE Index) aims to provide a
comprehensive database to aid in understanding the expression of human
genes in normal human tissues
- Integrated
Microbial Genomes (IMG) Access to nearly 300 draft
or completed genome sequences from archae and bacteria
- IMAGE
consortium database Query The world's largest public
collection of genes
- Jackson
Laboratory Mouse Genome Database Collection of mouse
genetic and phenotypic data
- KSD
- Kinase Sequence Database Collection of protein
kinase sequences grouped into families by homology of their catalytic
domains. The aligned sequences are available in MS Excel format, as
well as in HTML
- Knockout Mice Database of
knockout mice searchable according to phenotype or gene involved
- Mammalian
Gene Collection (MGC) New effort by the NIH to
generate publicly accessible full-length complementary DNA
(cDNA)resources. The project entails the production of cDNA libraries
and sequences, database and repository development, as well as the
support of research forimproved library construction, sequencing, and
analytic technologies
- Mitomap
v. 3.1 Human mitochondrial genome database;
structure - function correlation
- Mobile
group II introns Resource to identify and catalog
group II introns
- NONCODE
Database of noncoding RNAs
- OMIM
Online Mendelian inheritance in man - catalog of human genes and
genetic disorders
- RTPrimerDB
- Real Time PCR Primer and Probe Database Public
database holding real time PCR primers and probes for popular
chemistries (Intercalating Dyes, Hydrolysis Probes, Hybridisation
Probes, Molecular Beacons) to prevent time-consuming primer design and
experimental optimisation
- snoRNA-LBME-db
Database of human C/D box and H/ACA modification guide RNAs
- Stanford University - Saccharomyces Genome
Database Scientific database of the molecular
biology and genetics of the baker's (or budding) yeast
- STACKdb Database of
virtual human transcripts, based on GenBank Data
- Subviral
RNA Database About 1300 nucleotide sequences for
viroids and related solo RNA molecules
- The Gene Expression Database (GXD)
The Gene Expression Database is a community resource for gene
expression information from the laboratory mouse. GXD stores and
integrates different types of expression data and makes these data
freely available in formats appropriate for comprehensive analysis.
There is particular emphasis on endogenous gene expression during mouse
development
- TIGR
databases Databases of The Institute for Genomic
Research: The TIGR Microbial Database, The TIGR Parasites Database,
TIGR Gene Indices, The TIGR Arabidopsis thaliana Database, The
Expressed Gene Anatomy Database, Sequences, Sources, Taxa
- The
Genetics of Cancer Information resource to help to
understand the genetic basis of cancer and to interpret new discoveries
in the field of cancer genetics
- UniGene
Non-redundant, gene-oriented clusters
- Whitehead Institute / MIT
Genetic and physical maps of the mouse genome
Alternative Splicing Databases
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Proteomics
- Bioinformatic
Harvester Harvester” caches and
cross-links public bioinformatic databases and prediction servers to
provide fast access to protein specific bioinformatic information.
- DBSubLoc - Database of Protein Subcellular
Localization Database of protein subcellular
localization that contains proteins from SWISS-PROT and PIR, is
annotated with respect to subcellular localization and is classified
and categorized by cross reference to taxonomies and gene ontology
- DSDBASE - disulphide database
Database on disulphide bonds in proteins that provides information on
native disulphides and those which are stereochemically possible
between pairs of residues in a protein
- EMBL
Protein and Peptide Group Protein and peptide group
WWW server of the European Molecular Biology Laboratory
- Enzyme
Enzyme nomenclature database
- Enzyme Structures Database
Contains close to 4000 known enzyme structures that have been deposited
in the Brookhaven Protein Data Bank
- ExactAntigen
Comprehensive gene-specific and species-specific information resource
for reagents (antibodies, ELISA, siRNA, recombinant proteins,
chemicals, and tissue arrays), researchers, and patents
- GTOP - Genomes TO Protein structures and
functions Database consisting of data analyses of
proteins identified by various genome projects. The database mainly
uses sequence homology analyses and features extensive utilization of
information on three-dimensional structures
- HPMR
Site dedicated to studies on plasma membrane receptors in the human
genome, combining text-based and sequence-based search tools. The web
site categorizes major groups of human plasma membrane receptors based
on protein sequences, evolutionary relationships, and published
literature
- InterPro
Database of protein families, domains and functional sites in which
identifiable features found in known proteins can be applied to unknown
protein sequences
- IMGT
Server ImMunoGeneTics database, an integrated
database specialising in Immunoglobulins (Ig), T cell receptors (TcR)
and Major Histocompatibility Complex (MHC) molecules of all vertebrate
species
- LPFC - A Library of Protein Family Cores
Database of proteins classified into families of structures
- LOCATE
subcellular location database Curated database that
houses data describing the membrane organization and subcellular
localization of proteins from the RIKEN FANTOM3 mouse protein sequence
set
- MEROPS
Peptidase database of the Babraham Institute in Cambridge / UK -
catalog of more than 900 proteases among others with structural data
and occurrance in organisms
- Meta-MEME
Motiv-based hidden Markov modeling of biological sequences - software
toolkit for building and using motiv-based hidden Markov models of DNA
and proteins. The input to Meta-MEME is a set of similar protein
sequences.
- MIA -
Molecular Information Agent The Molecular
Information Agent (MIA) is a web server that searches biological
databases to find the existing information about a macromolecule. At
the present time, the MIA supports search by molecule identification
number, gene symbol, sequence, and key word.
- MSRS
Website Searchable database of antibodies and probes
including antibody, host, antigen species, label,...
- MOWSE Search Form Rapid
identification of proteins by peptide-mass fingerprinting
- MPDB Membrane Protein Database
On-line, searchable, relational database with select structural and
functional information on membrane proteins and peptides
- National
Center for Biotechnology Information Gateway to
protein and DNA databases
- Natural
System of Gene Families from Complete Genomes
Clusters of orthologous groups (COGs) were delineated by comparing
protein sequences encoded in 8 complete genomes, representing 6 major
phylogenetic lineages
- Nuclear
Protein Database (NPD) Searchable database of
information on proteins that are localised to the nucleus of vertebrate
cells
- NURSA -
Nuclear Receptor Signaling Atlas Resource for
information relating to key aspects of orphan nuclear receptor biology
- PDB
WWW Home Page USA Archive of experimentally
determined three-dimensional structures of biological macromolecules
- PEPTIDE MASS SEARCH
Searches the protein database for multiple peptides of individual
proteins
- Pfam
- Protein families database of alignments and HMMs
Large collection of multiple sequence alignments and hidden Markov
models covering many common protein domains and families
- PhosphoSite
Curated, sequence-oriented protein database dedicated to in vivo
phosphorylation sites
- PRIDE
- PRoteomics IDEntifications database Public
repository for protein and peptide identifications together with the
evidence supporting these identifications
- PrionDB
Molecular specific information system for prion proteins
- PROLYSIS Protease and
protease inhibitor Web server at the University of Tours, France -
Introduction to proteases and their inhibitors, including assays and
enzyme kinetics
- ProteinDBS
Real-time database search and similarity rankings of 3D protein
structures
- Protein
Prospector Tools for mining sequence databases in
conjunction with mass proteometry experiments
- Proteome
Alliance Page of the Project of the German Research
Ministry "Proteom-Analyse des Menschen". This project focusses on the
development of research tools and their clinical application in human
proteome analysis
- proteomicsSURF
Covers bioanalytical approaches in the field of proteomics covering
microarrays, spectroscopy, spectrometry, and bioinformatics
- PROTONET
Global classification of the proteins into hierarchical clusters
- PROW - Protein Reviews on the Web
International WWW Resource/Journal on Human Proteins - NCBI
- PROWL
Protein information retrieval on-line world wide web lab
- The
Pawson Lab: Researching Signal Transduction
Information about protein domains important for transcription factors
- The
Human Serum Proteome Comprehensive human serum
proteomic database
- UniProt
UniProt (Universal Protein Resource) is the world's most comprehensive
catalog of information on proteins. It is a central repository of
protein sequence and function created by joining the information
contained in Swiss-Prot, TrEMBL, and PIR.
- WEB
P.A.G.E Phoretix´ World-Wide Collaboration
in 2D Gel Electrophoresis: On-Line Databases
- 2D
Gel Databases World-Wide Phoretix´ links
to 2D gel databases on the internet
- Brookhaven
Protein Database Originated by the Brookhaven
National Laboratory, now hosted at the Research Collaboratory for
Structural Bioinformatics
- ExPASy
University and Hospital of Geneva WWW server, database entry point for
SWISS-PROT, PROSITE, SWISS-2DPAGE, SWISS-3DIMAGE, ExPASy Tools
- Cogent - Complete Genome Tracking Database
Single resource containing predicted peptides from all publicly
available fully sequenced genomes
- Human Mitochondrial Protein Database
The Human Mitochondrial Protein Database (HMPDb) provides comprehensive
data on mitochondrial and human nuclear encoded proteins involved in
mitochondrial biogenesis and function. This database consolidates
information from SwissProt, LocusLink, Protein Data Bank (PDB),
GenBank, Genome Database (GDB), Online Mendelian Inheritance in Man
(OMIM), Human Mitochondrial Genome Database (mtDB), MITOMAP,
Neuromuscular Disease Center and Human 2-D PAGE Databases
- HPRD -
Humane Protein Reference Database Platform to
visually depict and integrate information pertaining to domain
architecture, post-translational modifications, interaction networks
and disease association for each protein in the human proteome. All
OMIM genes have been annotated
- STACKdb Database of
virtual human transcripts, based on GenBank Data
- SWISS-PROT
Annotated protein sequence database - EBI site
- SWISS-PROT
and TrEMBL Annotated protein sequence database -
ExPASy site
- UAB Proteomics Database
Repository for the storage and linkage of two-dimensional gel images
and the associated information obtained through mass spectrometry
analysis
Back to Genomics, Proteomics & Transcriptomics
Glycomics
- Carbhyd Links to
information on carbohydrate structures, biochemistry, and related
graphics tools for modeling sugar molecules
- Complex
Carbohydrate Research Center - CCRC On-line neural
net recognition system for GC profiles and NMR spectra
- Complex Carbohydrate Structure Database -
CCSD Carbohydrate equivalent to GenBank, also known
as CarbBank. Database of carbohydrate structure and related information
- Glycominds
Database Glycomics database that compiles
information about glycoconjugated molecules - including their
structures, functions, and interactions with other molecules
- GLYCOsciences.de (SweetDB)
Databases and bioinformatics tools for glycobiology and glycomics
- GlycoSuiteDB Annotated
and curated relational database of glycan structures containing most
published O-linked glycans, and N-linked glycans in the literature from
years 1990-2000. Information is available concerning the glycan type,
linkage and anomeric configuration, mass and composition.
- NetOGlyc
The web server returns probable O-glycosylation sites of mammalian
mucin glycoproteins based on the predictions of a neuronal network
- Sugabase Links to various
glyco-related directories and databases
Back to Genomics, Proteomics & Transcriptomics
Lipids
Back to Genomics, Proteomics & Transcriptomics
Pathways
- BBID-Biological
Biochemical Image Database Searchable database of
images of putative biological pathways, macromolecular structures, gene
families, and cellular relationships
- Biocarta
Pathways Dynamic graphical models to depict gene
interactions
- Biocatalysis/Biodegradation Database
Microbial biocatalytic reactions and biodegradation pathways primarily
for xenobiotic chemical compounds
- BioCyc
Database Collection Collection of Pathway/Genome
Databases. Each database in the BioCyc collection describes the genome
and metabolic pathways of a single organism, with the exception of the
MetaCyc database, which is a reference source on metabolic pathways
from many organisms
- Biomolecular and Cellular Modeling Program
NASA exobiology program - research activities, publications, images,
links
- Biozon
Unified biological resource on DNA sequences, proteins, complexes and
cellular pathways
- BRENDA
Main collection of enzyme functional data available to the scientific
community
- Brite
Biomolecular relations in information transmission and expression
- Computational
Biology at MCS Argonne Programs and databases
related to phylogenetic pathways
- Expasy
Biochemical Pathways Searchable index, based on the
famous Boehringer Mannheim "Biochemical Pathways" map
- GenePath
Web-enabled intelligent assistant for the analysis of genetic data and
for discovery of genetic networks
- iHOP
- information hyperlinked over proteins Information
in PubMed is converted to a navigable resource by employing genes and
proteins as hyperlinks between sentences and abstracts
- KEGG
- Kyoto Encyclopedia of Genes and Genomes Molecular
and gene catalogs for all known compounds in living cells, some 100
maps of metabolic and regulatoric pathways
- Klotho
Biochemical compounds declarative database
- Malaria
Parasite Metabolic Pathways Compilation of
bochemical pathways that describe the mode of action pf the Plasmodium
parasite
- PUMA2
High throughput comparative and evolutionary analysis of genomes and
metabolic networks with Grid computational backend
- Reactome
Curated resource of core pathways and reactions in human biologyurated
resource of core pathways and reactions in human biology
- Signal
Transduction Pathways Knowledge management tool
helping to keep up with, sort out, and piece together insights from
biological signal transduction research - established by Science and
Stanford University Libraries
- The
Signaling Gateway Comprehensive resource site covering over 3400 cell signaling proteins including synonyms, sequence information, biophysical properties, structure and gene data
- WikiPathways Public platform dedicated to the curation of biological pathways by and for the scientific community
- The Cytokines WEB
Scientific information about cytokines and their receptors, including
3-D structural information and topological and evolutionary
relationships
- The Cytokinetic Mafia
Information, papers, and links relevant for Cytokine research activities
- GPCRDB
Information system for G protein-coupled receptors (GPCRs)
- GPCRIPDB
Information system for GPCR interacting proteins
- The Protein Kinase Resource Collaborative project of protein kinase researchers and computational biologists working to create a database integrating molecular and cellular information
- Protein Kinase Resource Protein Kinase Resource database and Web service
- The
Nuclear Receptor Resource The Nuclear Receptor
Resource (NRR) Project is a collection of individual databases on
members of the steroid and thyroid hormone receptor superfamily. Hosted
by the Georgetown University
- NucleaRDB
Information system for nuclear receptors
Back to Genomics, Proteomics & Transcriptomics
Pharmacology
- BindingDB
Database of measured binding affinities for biomolecules, genetically
or chemically modified biomolecules, and synthetic compounds
- ChemMine
Compound mining database that facilitates drug and agrochemical
discovery and chemical genomics screens
- Clinical
Pharmacology Comprehensive information on all
FDA-approved drugs and OTC pharmaceuticals - indications, effects, and
side effects
- Pharmacology Information
resource and link list covering a wide variety of pharmacological
aspects
- PharmGKB
- The Pharmacogenetics and Pharmacogenomics Knowledge Base
Central repository for genetic and clinical information about people
who have participated in research studies at various medical centers in
the PGRN. In addition, genomic data, molecular and cellular phenotype
data, and clinical phenotype data are accepted from the scientific
community at large.
- RXList
Information about the top 200 US prescriptions Dispensed
- Self-Organizing Map of NCI Antiviral Screen
Compounds Searchable database about antiviral
compounds
Back to Genomics, Proteomics & Transcriptomics
Pharmacogenetics
- Cancer
- COSMIC - Catalog of Somatic Mutations in
Cancer Contains information on publications, samples
and mutations. Includes samples which have been found to be negative
for mutations during screening therefore enabling frequency data to be
calculated for mutations in different genes in different cancer types
Back to Genomics, Proteomics & Transcriptomics
Physiome
- PhenomicDB
Multi-species genotype/phenotype database
- Physiome
Project The Physiome Project is a worldwide effort
to define the physiome through the development of databases and models
which will facilitate the understanding of the integrative function of
cells, organs, and organisms
Back to Genomics, Proteomics & Transcriptomics
Systems
Biology
- Protein
Lounge Interactive web-based databases and software
to cope with the complexity of systems biology
- The BioGRID Comprehensive database of protein and genetic interactions
Back to Genomics, Proteomics & Transcriptomics
Toxicology
& Drug Metabolism
- DSSTox
The Distributed Structure-Searchable Toxicity (DSSTox) Database Network
provides a community forum for publishing standard format,
structure-annotated chemical toxicity data files for open public access
- Eurotox
Homepage of the International Union of Toxicology
- Genetic
Association Database Archive of human genetic
association studies of complex diseases and disorders. The goal of this
database is to allow the user to rapidly identify medically relevant
polymorphism from the large volume of polymorphism and mutational data,
in the context of standardized nomenclature
- OSIRIS Property Explorer
The OSIRIS Property Explorer allows to draw chemical structures and
calculates on-the-fly various drug-relevant properties whenever a
structure is valid
- IUTOX
Homepage of Eurotox, the Association of European Toxicologists and
European Societies of Toxicology
- TOXNET
Access to different toxicology related databases
Back to Genomics, Proteomics & Transcriptomics
Back to Index
Back to Index
Regulatory
Affairs
- ORA - Office of Regulatory Affairs
FDA site featurung among others compliance policy guides, regulatory
procedures manual and other FDA compliance documents and information
like 21 CFR Part 11
- 21CFRPart11.com
The web site provides access to information on
the 21 CFR Part 11 rule and also maintains an email list that actively
discusses issues and concerns with industry peers and government
regulators. The site features the latest conference, meeting and
seminar information as well as links to vendors and consultants.
GMP and ISO 9001
- GMP Navigator GMP related
news and information - hosted by Concept Heidelberg
- ISO Online The source of
ISO 9000 and more than 13 700 International Standards for business,
government and society
Material Safety Data Sheets
Back to Rules and Regulations
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